Glyma03g26060 - SoyBase

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Report for Sequence Feature Glyma03g26060

Feature Type:	gene_model
Chromosome:	Gm03
Start:	33395825
stop:	33397519
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g26060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32300	AT	Annotation by Michelle Graham. TAIR10: uclacyanin 1 \| chr2:13722510-13723464 FORWARD LENGTH=261	SoyBase	E_val: 1.00E-33	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
PF02298	PFAM	Plastocyanin-like domain	JGI		ISS
UniRef100_B9SKK1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Uclacyanin-2, putative n=1 Tax=Ricinus communis RepID=B9SKK1_RICCO	SoyBase	E_val: 7.00E-38	ISS
UniRef100_UPI00018C6627	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00018C6627 related cluster n=1 Tax=unknown RepID=UPI00018C6627	SoyBase	E_val: 9.00E-131	ISS

Expression Patterns of Glyma03g26060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g26060

Paralog	Evidence	Comments
Glyma07g13840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g26060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g109900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g26060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g26060

Limit To All Plant Sequences

>Glyma03g26060.2   sequence type=transcript   gene model=Glyma03g26060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAATTCAATTTGAAAGTCAAATTCTATGTTCAACCAGGTGTTCAAGTATGACTCCACTCATCAAGTTGATGAGGTTGATGAGAGTGGATACAACAGCTGCAGCTCAAGCAACAGCATCAAGAACTACCAAGATGGAAACTCCAAGATTGAATTGACTTCACCAGGCAAAAGGTACTTCTTGTGCCCCATTTCAGGCCACTGTGCTGGAGGCATGAAGCTGCAAATTAATGTGGCTGCTGCTAGTGGGACCCCCCCAACAACCCCAAGTGGCACCCCACCAACCACCCCATCAAACCCTTCTCCTTCTCCTCCCTCTGAGTCAGGATCCACCAACACCACTTCACCACCAAAGCCTAGTGGAGCTGTAACTGTTTCCAGTGGCATTGGCCTTTTGGTGGGGTCTTTCTTTGTGTCAGCAATTATGTTTGGTTTCATGGGCTAGGGAAGAGGCAGTGCTGTTTTTTTTTTATTCTCCTTTTTATTAATATGTTATTGTTTTGCTGAGAGTTTGTGTGAATTTCATCATTTAATCCAGATGTATATCTAATCTTGATATGTATCTCCTTTTAATATTTAAAAATGACACATTTCTTTAGCTGCTTCCCCCCCTATTCTTTTGATAGCTGGGATGATGGTGACATTATATATATCTAATATCCCTTGCTTTATTTTGTTATCTTTTGGCTGGAAATAATTGTACCTGAAACAATTGTAGTCCACTTAAATAGTGGTCTTTTTGTAAGAAA

Coding sequences of Glyma03g26060

Limit To All Plant Sequences

>Glyma03g26060.1   sequence type=CDS   gene model=Glyma03g26060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGCGCAATTGCAGCTTCTTTTTTGGTTCTGCTTCTGGCTTTCCCCACTGTATTTGGAGCTGACCATGAAGTTGGTGACACTAGTGGATGGGCCCTCGGAGTTAATTACAACACCTGGGCCTCTGGGAAAACTTTCACAGTTGGTGACACTTTGGTGTTCAAGTATGACTCCACTCATCAAGTTGATGAGGTTGATGAGAGTGGATACAACAGCTGCAGCTCAAGCAACAGCATCAAGAACTACCAAGATGGAAACTCCAAGATTGAATTGACTTCACCAGGCAAAAGGTACTTCTTGTGCCCCATTTCAGGCCACTGTGCTGGAGGCATGAAGCTGCAAATTAATGTGGCTGCTGCTAGTGGGACCCCCCCAACAACCCCAAGTGGCACCCCACCAACCACCCCATCAAACCCTTCTCCTTCTCCTCCCTCTGAGTCAGGATCCACCAACACCACTTCACCACCAAAGCCTAGTGGAGCTGTAACTGTTTCCAGTGGCATTGGCCTTTTGGTGGGGTCTTTCTTTGTGTCAGCAATTATGTTTGGTTTCATGGGCTAG

>Glyma03g26060.2   sequence type=CDS   gene model=Glyma03g26060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAACCAGGTGTTCAAGTATGACTCCACTCATCAAGTTGATGAGGTTGATGAGAGTGGATACAACAGCTGCAGCTCAAGCAACAGCATCAAGAACTACCAAGATGGAAACTCCAAGATTGAATTGACTTCACCAGGCAAAAGGTACTTCTTGTGCCCCATTTCAGGCCACTGTGCTGGAGGCATGAAGCTGCAAATTAATGTGGCTGCTGCTAGTGGGACCCCCCCAACAACCCCAAGTGGCACCCCACCAACCACCCCATCAAACCCTTCTCCTTCTCCTCCCTCTGAGTCAGGATCCACCAACACCACTTCACCACCAAAGCCTAGTGGAGCTGTAACTGTTTCCAGTGGCATTGGCCTTTTGGTGGGGTCTTTCTTTGTGTCAGCAATTATGTTTGGTTTCATGGGCTAG

Predicted protein sequences of Glyma03g26060

Limit To All Plant Sequences

>Glyma03g26060.1   sequence type=predicted peptide   gene model=Glyma03g26060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAIAASFLVLLLAFPTVFGADHEVGDTSGWALGVNYNTWASGKTFTVGDTLVFKYDSTHQVDEVDESGYNSCSSSNSIKNYQDGNSKIELTSPGKRYFLCPISGHCAGGMKLQINVAAASGTPPTTPSGTPPTTPSNPSPSPPSESGSTNTTSPPKPSGAVTVSSGIGLLVGSFFVSAIMFGFMG*

>Glyma03g26060.2   sequence type=predicted peptide   gene model=Glyma03g26060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFNQVFKYDSTHQVDEVDESGYNSCSSSNSIKNYQDGNSKIELTSPGKRYFLCPISGHCAGGMKLQINVAAASGTPPTTPSGTPPTTPSNPSPSPPSESGSTNTTSPPKPSGAVTVSSGIGLLVGSFFVSAIMFGFMG*

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